| Database |
URL |
Description |
|
|
|
| Major Sequence Repositories |
|
|
| GenBank |
www.ncbi.nlm.nih.gov/Web/Genbank/ |
All
known nucleotide and protein sequences |
| EMBL
Nucleotide Sequence Database |
www.ebi.ac.uk/embl.html |
All
known nucleotide and protein sequences |
| DNA
Data Bank of Japan (DDBJ) |
www.ddbj.nig.ac.jp |
All
known nucleotide and protein sequences |
| Genome Sequence Database (GSDB) |
www.ncgr.org/gsdb |
All
known nucleotide and protein sequences |
| TIGR
Gene Indices |
www.tigr.org/tdb/tdb.html |
Non-redundant, gene-oriented clusters |
| UniGene |
www.ncbi.nlm.nih.gov/UniGene/ |
Non-redundant, gene-oriented clusters |
| top |
|
|
|
Comparative
Genomics |
|
|
|
Clusters of
Orthologous Groups (COG) |
www.ncbi.nlm.nih.gov/COG |
Phylogenetic classification of proteins from 21 complete genomes
|
|
XREFdb |
www.ncbi.nlm.nih.gov/XREFdb/ |
Cross-referencing of model organism genetics with mammalian
phenotypes |
| top |
|
|
|
Gene Expression
|
|
|
|
ASDB |
cbcg.nersc.gov/asdb |
Protein products and expression patterns of alternatively-spliced
genes |
| Axeldb |
www.dkfz-heidelberg.de/abt0135/axeldb.htm |
Gene
expression in Xenopus |
|
BodyMap |
bodymap.ims.u-tokyo.ac.jp |
Human and mouse gene expression data |
|
EpoDB |
www.cbil.upenn.edu/epodb |
Genes expressed in vertebrate RBC |
|
FlyView |
pbio07.uni-muenster.de/ |
Drosophila development and genetics |
| Gene
Expression Database (GXD) |
http://www.informatics.jax.org/mgihome/GXD/aboutGXD.shtml
|
Mouse
gene expression and genomics |
|
Kidney Development
Database |
www.ana.ed.ac.uk/anatomy/database/
kidbase/kidhome.html |
Kidney development and gene expression |
|
MAGEST |
star.scl.kyoto-u.ac.jp/magest/ |
Ascidian (Halocynthia roretzi) gene expression
patterns |
|
Mouse Atlas and Gene
Expression Database |
genex.hgu.mrc.ac.uk |
Spatially-mapped gene expression data |
|
PEDB |
chroma.mbt.washington.edu/PEDB/ |
Normal and aberrant prostate gene expression |
|
Tooth Development
Database |
honeybee.helsinki.fi/toothexp/toothdev.htm |
Gene
expression in dental tissue |
| TRIPLES |
ygac.med.yale.edu/triples/triples.htm |
Transposon-Insertion
Phenotypes, Localization, Expression in Saccharomyces |
| top |
|
|
| Gene Identification and Structure |
|
|
| Ares
Lab Intron Site |
www.cse.ucsc.edu/research/compbio/
yeast_introns.html |
Yeast
spliceosomal introns |
| COMPEL |
compel.bionet.nsc.ru/FunSite.html |
Composite regulatory elements |
| CUTG |
www.kazusa.or.jp/codon/ |
Codon
usage tables |
| EID |
mcb.harvard.edu/gilbert/EID/ |
Protein-coding, intron-containing genes |
| EPD |
www.epd.isb-sib.ch |
Eukaryotic POL II promoters |
| ExInt |
intron.bic.nus.edu.sg/exint/exint.html |
Exon-intron structure of eukaryotic genes |
| IDB/IEDB |
nutmeg.bio.indiana.edu/intron/index.html |
Intron sequence and evolution |
| PLACE |
www.dna.affrc.go.jp/htdocs/PLACE |
Plant
cis-acting regulatory elements |
| PlantCARE |
sphinx.rug.ac.be:8080/PlantCARE |
Plant
cis-acting regulatory elements |
| TransTerm |
uther.otago.ac.nz/Transterm.html |
Codon
usage, start and stop signals |
| TRRD |
wwwmgs.bionet.nsc.ru/mgs/dbases/trrd4/ |
Regulatory regions of eukaryotic genes |
| YIDB |
www.EMBL-Heidelberg.DE/ExternalInfo/
seraphin/yidb.html |
Yeast
nuclear and mitochondrial intron sequences |
| top |
|
|
|
Genetic Maps
|
|
|
| GeneMap '99 |
www.ncbi.nlm.nih.gov/genemap/ |
International Radiation Mapping Consortium human gene map
|
| G3-RH |
www-shgc.stanford.edu/RH/ |
Stanford G3 and TNG radiation hybrid maps |
| GB4-RH |
www.sanger.ac.uk/RHserver/RHserver.shtml |
Genebridge4 (GB4) human radiation hybrid maps |
| GDB |
www.gdb.org |
Human
genes and genomic maps |
| DRESH |
www.tigem.it/LOCAL/drosophila/dros.html |
Human
cDNA clones homologous to Drosophila mutant genes |
| GenAtlas |
www.citi2.fr/GENATLAS/ |
Human
genes, markers, and phenotypes |
| HuGeMap |
www.infobiogen.fr/services/Hugemap |
Human
genome genetic and physical map data |
| IXDB |
ixdb.mpimg-berlin-dahlem.mpg.de |
Physical maps of human chromosome X |
| Radiation Hybrid Database |
www.ebi.ac.uk/RHdb |
Radiation hybrid map data |
| top |
|
|
| Genomic Databases |
|
|
| ACeDB |
www.sanger.ac.uk/Software/Acedb/ |
C.
elegans, S. pombe, and human sequences and genomic
information |
| FilGenNet |
www.neb.com/fgn/filgen1.html |
Genome research on filarial nematode parasites of humans
|
| FlyBase |
www.fruitfly.org |
Drosophila sequences and genomic information |
| Mouse
Genome Database (MGD) |
www.informatics.jax.org |
Mouse
genetics and genomics |
| Saccharomyces Genome Database (SGD) |
genome-www.stanford.edu/Saccharomyces |
Saccharomyces cerevisiae genome |
| AMmtDB |
bio-www.ba.cnr.it:8000/BioWWW/#AMMTDB |
Metazoan mitochondrial DNA sequences |
| Arabidopsis Database (AtDB) |
www.arabidopsis.org/search/ |
Arabidopsis thaliana genome |
| CropNet |
synteny.nott.ac.uk |
Genome mapping in crop plants |
| CyanoBase |
www.kazusa.or.jp/cyano/mutants |
Synechocystis sp. genome |
| EcoGene |
bmb.med.miami.edu/EcoGene/EcoWeb |
E.
Coli K-12 sequences |
| EMGlib |
pbil.univ-lyon1.fr/emglib/emglib.html |
Completely sequenced bacterial genomes and the yeast genome
|
| GOBASE |
megasun.bch.umontreal.ca/gobase/gobase.html |
Organelle genome database |
| HIV
Sequence Database |
hiv-web.lanl.gov/ |
RNA
sequences |
| Human
BAC Ends Database |
www.tigr.org/tdb/humgen/bac_end_search/
bac_end_intro.html |
Non-redundant human BAC end sequences |
| INE |
www.dna.affrc.go.jp:82/giot/INE.html |
Rice
genetic and physical maps and sequence data |
| MitBASE |
www3.ebi.ac.uk/Research/Mitbase/mitbase.pl |
Mitochondrial genomes,
intra-species variants, and mutants |
| MitoDat |
www-lecb.ncifcrf.gov/mitoDat/ |
Mitochondrial proteins (predominantly human) |
| MITOMAP |
www.gen.emory.edu/mitomap.html |
Human
mitochondrial genome |
| MITONUC/MITOALN |
bio-www.ba.cnr.it:8000/srs6/ |
Nuclear genes coding for mitochondrial proteins |
| Munich Info Center for Protein Seqs (MIPS) |
www.mips.biochem.mpg.de |
Protein and genomic sequences |
| NRSub |
pbil.univ-lyon1.fr/nrsub/nrsub.html |
Bacillus subtilis genome |
| TIGR
Microbial Database |
www.tigr.org/tdb/mdb/mdb.html |
Microbual genomes and chromosomes |
| ZFIN |
zfish.uoregon.edu/ZFIN/ |
Zebrafish genetics and
development; mutant and wild-type lines |
| ZmDB |
zmdb.iastate.edu/ |
Maize
genome database |
| top |
|
|
|
Intermolecular
Interactions |
|
|
|
Database of Ribosomal
Crosslinks (DRC) |
www.mpimg-berlin-dahlem.mpg.de/~ag_ribo/
ag_brimacombe/drc/ |
Ribosomal crosslinking data |
| DIP |
dip.doe-mbi.ucla.edu/ |
Catalog of protein-protein interactions |
|
DPInteract
|
arep.med.harvard.edu/dpinteract/ |
Binding sites for E. coli DNA-binding proteins |
| top |
|
|
| Metabolic Pathways and Cellular Regulation |
|
|
| Kyoto
Encycl. of Genes and Genomes (KEGG) |
www.genome.ad.jp/kegg |
Metabolic and regulatory pathways |
| EcoCyc |
ecocyc.pangeasystems.com/ecocyc |
E.
coli K-12 genome, gene products, and metabolic pathways |
| ENZYME |
www.expasy.ch/enzyme/ |
Enzyme nomenclature |
| EpoDB |
cbil.humgen.upenn.edu/epodb |
Genes
expressed during human erythropoiesis |
| FlyNets |
gifts.univ-mrs.fr/FlyNets/FlyNets_home_page.html |
Drosophila melanogaster molecular interactions |
| Klotho |
www.ibc.wustl.edu/klotho/ |
Collection and categorization of biological compounds |
| LIGAND |
www.genome.ad.jp/dbget/ligand.html |
Enzymatic ligands, substrates, and reactions |
| RegulonDB |
www.cifn.unam.mx/Computational_Biology/
regulondb/ |
E.
coli pathways and regulation |
| UM-BBD |
www.labmed.umn.edu/umbbd/ |
Microbial biocatalytic reactions and biodegradation pathways
|
| WIT2 |
wit.mcs.anl.gov/WIT2/ |
System for functional curation and development of metabolic models
|
| top
|
|
|
|
Mutation Databases
|
|
|
| Online Mendelian Inheritance in Man |
www.ncbi.nlm.nih.gov/Omim/ |
Catalog of human genetic and genomic disorders |
|
ALFRED |
fondue.med.yale.edu/ |
Allele frequencies and DNA polymorphisms |
| Androgen Receptor Gene Mutations |
www.mcgill.ca/androgendb/ |
Mutations in the androgen receptor gene |
| Asthma and Allergy Database |
cooke.gsf.de |
|
| Asthma Gene Database |
cooke.gsf.de/asthmagen/main.cfm |
Linkage and mutation studies on the genetics of asthma and allergy
|
| Atlas
of Genetics and Cytogenetics in Oncology |
www.infobiogen.fr/services/chromcancer/ |
Chromosomal abnormalities in cancer |
| BTKbase |
www.uta.fi/laitokset/imt/bioinfo/BTKbase/ |
Mutation registry for X-linked agammaglobulinemia |
| Cytokine Gene Polymorphism Database |
www.pam.bris.ac.uk/services/GAI/cytokine4.htm |
Cytokine gene polymorphisms, in vitro expression and
disease-association |
| Database of Germline p53 Mutations |
www.lf2.cuni.cz/homepage.html |
Mutations in human tumor and cell line p53 gene |
| dbSNP |
www.ncbi.nlm.nih.gov/SNP |
Single nucleotide polymorphisms |
| GRAP
Mutant Databases |
tinyGRAP.uit.no/GRAP/ |
Mutants of family A G-Protein Coupled Receptors (GRAP)
|
| Haemophila B Mutation Database |
www.umds.ac.uk/molgen/haemBdatabase.htm |
Point
mutations, short additions, and deletions in the Factor IX gene
|
| HGBASE |
hgbase.interactiva.de/ |
Intragenic sequence polymorphisms |
| HIV-RT |
hivdb.stanford.edu/hiv/ |
HIV
reverse transcriptase and protease sequence variation |
| Human
Gene Mutation Database (HMGD) |
uwcm.web.cf.ac.uk/uwcm/mg/hgmd0.html |
Known
(published) gene lesions responsible for human inherited
disease |
| Human
PAX2 Allelic Variant Database |
www.hgu.mrc.ac.uk/Softdata/PAX2/ |
Mutations in human PAX2 gene |
| Human
PAX6 Allelic Variant Database |
www.hgu.mrc.ac.uk/Softdata/PAX6/ |
Mutations in human PAX6 gene |
| Human
Type I and Type III Collagen Mutation |
www.le.ac.uk/genetics/collagen/ |
Human
type I and type III collagen gene mutations |
| iARC
p53 Database |
www.iarc.fr/p53/ |
Mis-sense mutations and small deletions in human p53 |
| KinMutBase |
www.uta.fi/imt/bioinfo/KinMutBase/ |
Disease-causing protein kinase mutations |
| KMDB |
mutview.dmb.med.keio.ac.jp/mutview3/
kmeyedb/index.html |
Mutations in human eye disease genes |
| Mutation Spectra Database |
info.med.yale.edu/mutbase/ |
Mutations in viral, bacterial, yeast, and mammalian genes
|
| NCL
Mutations |
www.ucl.ac.uk/ncl/ |
Mutations and polymorphisms in neuronal ceroid lipofuscinoses
genes |
| p53
Databases |
metalab.unc.edu/dnam/mainpage.html |
Human
p53 and hprt mutations; lacZ and lacI mutations |
| PAHdb |
www.mcgill.ca/pahdb/ |
Mutations at the phenylalanine hydroxylase locus |
| PMD |
pmd.ddbj.nig.ac.jp/ |
Compilation of protein mutant data |
| RB1
Gene Mutation Database |
home.kamp.net/home/ |
Mutations in the human retinoblastoma (RB1) gene |
| Ribosomal RNA Mutational Database |
ribosome.FandM.edu/ |
16S
and 23S ribosomal RNA mutation database |
| SV40
Large T-Antigen Mutant Database |
bigdaddy.bio.pitt.edu/SV40/ |
Mutations in SV40 large tumor antigen gene |
| top
|
|
|
| Pathology |
|
|
| FIMM |
sdmc.krdl.org.sg:8080/fimm/ |
Functional molecular immunology data |
| Mouse
Tumor Biology Database (MTB) |
tumor.informatics.jax.org |
Mouse
tumor names, classification, incidence, pathology, genetic
factors |
| PEDB |
www.mbt.washington.edu/PEDB/ |
Sequences from prostate tissue and cell type-specific cDNA
libraries |
| top |
|
|
|
Protein Databases
|
|
|
|
AARSDB |
rose.man.poznan.pl/aars/index.html |
Aminoacyl-tRNA synthetase sequences |
|
DAtA |
luggagefast.Stanford.EDU/group/arabprotein/ |
Annotated coding sequences from Arabidopsis |
|
Endogenous GPCR List
|
www.biomedcomp.com/GPCR.html |
G
protein-coupled receptors; expression in cell lines |
|
ESTHER |
www.ensam.inra.fr/cholinesterase/ |
Esterases and alpha/beta hydrolase enzymes and relatives
|
|
FUNPEP |
swift.embl-heidelberg.de/FUNPEP/ |
Low-complexity or compositionally-biased protein sequences
|
|
GPCRDB |
swift.embl-heidelberg.de/7tm/ |
G
protein-coupled receptors |
|
Histone Sequence
Database |
genome.nhgri.nih.gov/histones/ |
Histone and histone fold sequences and structures |
|
HIV Molecular
Immunology Database |
hiv-web.lanl.gov/immunology/ |
HIV
epitopes |
| Homeodomain Resource |
genome.nhgri.nih.gov/homeodomain |
Homeodomain sequences, structures, and related genetic
information |
| HUGE |
www.kazusa.or.jp/huge |
Large
(>50 kDa) human proteins and cDNA sequences |
| IMGT |
www.ebi.ac.uk/imgt/hla/ |
Immunoglobulin, T cell receptor, and MHC sequences |
| InBase |
www.neb.com/neb/inteins.html |
Intervening protein sequences (inteins) and motifs |
|
Kabat Database
|
immuno.bme.nwu.edu/ |
Sequences of proteins of immunological interest |
|
LGIC |
www.pasteur.fr/recherche/banques/LGIC/LGIC.html |
Ligand-gated ion channel sequences, alignments, and phylogeny
|
| MEROPS |
www.bi.bbsrc.ac.uk/Merops/Merops.htm |
Peptidase sequences and structures |
|
MHCPEP |
wehih.wehi.edu.au/mhcpep/ |
MHC-binding peptides |
| NRR |
nrr.georgetown.edu/nrr/NRR.html |
Steroid and thyroid hormone receptor superfamily |
|
Olfactory Receptor
Database |
ycmi.med.yale.edu/senselab/ordb/ |
Sequences for olfactory receptor-like molecules |
|
ooTFD |
www.ifti.org/ |
Transcription factors and gene expression |
| Peptaibol |
www.cryst.bbk.ac.uk/peptaibol/welcome.html |
Peptaibol (antibiotic
peptide) sequences |
|
PhosphoBase
|
www.cbs.dtu.dk/databases/PhosphoBase |
Protein phosphorylation sites |
| PKR |
delphi.phys.univ-tours.fr/Prolysis/ |
Protein kinase sequences, enzymology, genetics, and properties
|
| PPMdb |
sphinx.rug.ac.be:8080/ppmdb/index.html |
Arabidopsis plasma membrane protein sequence and expression
data |
| Prolysis |
delphi.phys.univ-tours.fr/Prolysis/ |
Proteases and natural and synthetic protease inhibitors
|
|
Receptor Database
(RDP) |
impact.nihs.go.jp/RDB.html |
Receptor protein sequences |
|
Ribonuclease P
Database |
www.mbio.ncsu.edu/RNaseP/home.html |
RNase
P sequences, alignments, and structures |
| SENTRA |
wit.mcs.anl.gov/WIT2/Sentra/ |
Sensory signal transduction proteins |
|
SWISS-PROT/TrEMBL
|
www.expasy.ch/sprot |
Curated protein sequences |
| TRANSFAC |
transfac.gbf.de/TRANSFAC/index.html |
Transcription factors and binding sites |
|
Wnt Database
|
www.stanford.edu/~rnusse/wntwindow.html |
Wnt
proteins and phenotypes |
| top |
|
|
|
Protein Sequence
Motifs |
|
|
| BLOCKS |
http://www.blocks.fhcrc.org/ |
Protein sequence motifs and alignments |
| PROSITE |
www.expasy.ch/prosite/ |
Biologically-significant protein patterns and profiles
|
| Pfam |
www.sanger.ac.uk/Software/Pfam/ |
Multiple sequence alignments and hidden Markov models of protein
domains |
| O-GLYCBASE |
www.cbs.dtu.dk/databases/OGLYCBASE/ |
Glycoproteins and O-linked glycosylation sites |
|
PIR-ALN |
www-nbrf.georgetown.edu/pirwww/
dbinfo/piraln.html |
Protein sequence alignments |
| PRINTS |
www.biochem.ucl.ac.uk/bsm/dbbrowser/PRINTS
/printscontents.html
|
Protein squence motifs and signatures |
| ProClass |
pir.georgetown.edu/gfserver/proclass.html |
Families defined by PROSITE patterns and PIR superfamilies
|
| ProDom |
www.toulouse.inra.fr/prodom.html |
Protein domain families |
| ProtoMap |
www.protomap.cs.huji.ac.il/ |
Automated hierarchical classification of SWISS-PROT proteins
|
| SMART |
coot.embl-Heidelberg.de/SMART/ |
Signalling domain sequences |
| SYSTERS |
www.dkfz-heidelberg.de/tbi/services/
cluster/systersform |
Protein clusters |
| top |
|
|
| Proteome Resources |
|
|
| AAindex |
www.genome.ad.jp/dbget/ |
Physico-chemical properties of peptides |
| REBASE |
rebase.neb.com/rebase/rebase.html |
Restriction enzymes and associated methylases |
| SWISS-2DPAGE |
www.expasy.ch/ch2d/ |
2D-PAGE images and reference maps |
| Yeast
Proteome Database (YPD) |
www.proteome.com/YPDhome.html |
Saccharomyces cerevisiae proteome |
| top |
|
|
|
Retrieval Systems
and Database Structure |
|
|
| KEYnet |
www.ba.cnr.it/keynet.html |
Keywords extracted from EMBL and GenBank |
| Virgil |
www.infobiogen.fr/services/virgil |
Database
interconnectivity |
| top |
|
|
|
RNA Sequences
|
|
|
|
ACTIVITY
|
wwwmgs.bionet.nsc.ru/systems/Activity/ |
Functional DNA/RNA site sequences |
|
Collection of
mRNA-like Noncoding RNAs |
www.man.poznan.pl/5SData/ncRNA/ |
Non-protein-coding RNA transcripts |
| Database on the Structure of LS rRNA |
rrna.uia.ac.be/
|
Alignment of large subunit ribosomal RNA sequences |
|
Database on the
Structure of SS rRNA |
rrna.uia.ac.be/ssu |
Alignment of small subunit ribosomal RNA sequences |
| Intronerator |
www.cse.ucsc.edu/~kent/intronerator/ |
RNA
splicing and gene structure in C. elegans |
|
Non-canonical Base
Pair Database |
prion.bchs.uh.edu/bp_type/ |
RNA
structures containing rare base pairs |
| PLMItRNA |
bio-www.ba.cnr.it:8000/srs/ |
Plant mitochondrial
tRNAs and tRNA genes |
| Pseudobase |
wwwbio.leidenuniv.nl/~Batenburg/PKB.html |
Information on RNA pseudo-knots |
|
Ribosomal Database
Project (RDP) |
www.cme.msu.edu/RDP |
rRNA
sequences, alignments, and phylogenies |
|
RNA Modification
Database |
medlib.med.utah.edu/RNAmods |
Naturally modified nucleosides in RNA |
|
SELEX_DB
|
wwwmgs.bionet.nsc.ru/mgs/systems/selex/ |
Selected DNA/RNA functional site sequences |
|
Small RNA Database
|
mbcr.bcm.tmc.edu/smallRNA/smallrna.html |
Direct sequencing of small RNA sequences |
| SRPDB |
psyche.uthct.edu/dbs/SRPDB/SRPDB.html |
Signal recognition particle RNA, protein, and receptor sequences
|
| tmRDB |
psyche.uthct.edu/dbs/tmRDB/tmRDB.html |
tmRNA
(10Sa RNA) sequences |
|
tmRNA Website
|
sunflower.bio.indiana.edu/~kwilliam/
tmRNA/home.html |
tmRNA
(10Sa RNA) sequences |
| UTRdb |
bigarea.area.ba.cnr.it:8000/EmbIT/UTRHome/
|
5'
and 3' UTRs of eukaryotic mRNAs |
|
Viroid and Viroid-Like
RNA Database |
www.callisto.si.usherb.ca/~jpperra |
Viroid and viroid-like RNA and vHDV sequences |
| Yeast
snoRNA Database |
www.bio.umass.edu/biochem/rna-sequence/
Yeast_snoRNA_Database/snoRNA_DataBase.html |
Yeast
small nucleolar RNAs |
| top |
|
|
| Structure |
|
|
| PDB |
www.rcsb.org/pdb/
|
Structure data determined by X-ray crystallography and NMR
|
| CATH |
www.biochem.ucl.ac.uk/bsm/cath/ |
Hierarchical classification of protein domain structures
|
| SCOP |
scop.mrc-lmb.cam.ac.uk/scop/ |
Familial and structural protein relationships |
| ASTRAL |
astral.stanford.edu |
Analysis of protein
structures and their sequences |
| BioImage |
www-embl.bioimage.org |
Searchable database of multidimensional biological images
|
| BioMagResBank |
www.bmrb.wisc.edu/ |
NMR spectroscopic data
from proteins, peptides, and nucleic acids |
| CSD |
www.ccdc.cam.ac.uk/prods/csd.html |
Crystal structure information for organic and metal organic
compounds |
| Database of Macromolecular Movements |
bioinfo.mbb.yale.edu/MolMovDB/ |
Descriptions of protein and macromolecular motions, including
movies |
| Decoys `R' Us |
dd.stanford.edu/ |
Computer-generated protein conformations based on sequence data
|
|
HIC-Up |
alpha2.bmc.uu.se/hicup/ |
Structures of small molecules ("hetero-compounds") |
|
HSSP |
www.sander.ebi.ac.uk/hssp/ |
Structural families and alignments; structurarly-conserved regions
|
| IMB
Jena Image Library |
www.imb-jena.de/IMAGE.html |
Visualization and analysis of three-dimensional biopolymer
structures |
| ISSD |
www.protein.bio.msu.su/issd |
Integrated sequence and structural information |
| LPFC |
www-smi.stanford.edu/projects/helix/LPFC/ |
Library of protein family core structures |
| MMDB |
www.ncbi.nlm.nih.gov/Structure/ |
All three-dimensional
structures, linked to NCBI Entrez system |
| MODBASE |
guitar.rockefeller.edu/modbase/ |
Comparative protein structure models |
|
PDB-REPRDB
|
www.rwcp.or.jp/papia |
Representative protein chains, based on PDB entries |
|
ProTherm
|
www.rtc.riken.go.jp/protherm.html |
Thermodynamic data for wild type and mutant proteins |
| RESID |
www-nbrf.georgetown.edu/pirwww/
dbinfo/resid.html |
Protein structure
modifications |
| top |
|
|
|
Transgenics
|
|
|
|
Cre Transgenic
Database |
www.mshri.on.ca/nagy/cre.htm |
Cre
transgenic mouse lines |
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Transgenic/Targeted
Mutation Database |
tbase.jax.org/ |
Information on transgenic animals and targeted mutations
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| top |
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Varied Biomedical
Content |
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DBcat |
www.infobiogen.fr/services/dbcat |
Catalog of databases |
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LocusLink/RefSeq
|
www.ncbi.nlm.nih.gov/LocusLink |
Curated sequence and descriptive information about genetic loci
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Molecular Probe
Database |
srs.ebi.ac.uk/ |
Synthetic oligonucleotides, probes, and PCR primers |
| MPDB |
www.biotech.ist.unige.it/interlab/mpdb.html |
Information on
synthetic oligonucleotides |
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NCBI Taxonomy Browser
|
www.ncbi.nlm.nih.gov/Taxonomy/
taxonomyhome.html |
Names
of all organisms that are represented in the genetic databases
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| PubMed |
www.ncbi.nlm.nih.gov/PubMed/ |
MEDLINE and Pre-MEDLINE citations |
| Tree
of Life |
phylogeny.arizona.edu/tree/phylogeny.html |
Information on phylogeny and biodiversity |
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