				SCOP

			(c) 2008 Pedro J. Silva






SYNTAX:		SCOP input_file.txt output_file.txt

input_file should be an output file generated by HCA_analyze. The program outputs the SCOP_class of each protein present in the original input file. The program assumes that PDB codes were used to name the original alignment files analyzed by HCA_analyze. E.g. an alignment of a sequence to chain E of PDB structure 1abf should have been named 1abf_e.aln. The program requires lower-case PDB names, and reports that SCOP class according to SCOP release 1.73 (November 2007)