a.4.1.1 - Homeodomain
a.4.1.2 - Recombinase DNA-binding domain
a.4.1.3 - Myb
a.4.1.11 - GARP response regulators
a.4.1.4 - DNA-binding domain of human telomeric protein, hTRF1
a.4.1.5 - Paired domain
a.4.1.6 - DNA-binding domain of rap1
a.4.1.7 - Centromere-binding
a.4.1.10 - Transcriptional regulator TyrR, C-terminal domain
a.4.1.8 - AraC type transcriptional activator
a.4.1.9 - Tetracyclin repressor-like, N-terminal domain
a.4.2.1 - Methylated DNA-protein cysteine methyltransferase, C-terminal domain
a.4.3.1 - ARID domain
a.4.5.1 - Biotin repressor-like
a.4.5.2 - LexA repressor, N-terminal DNA-binding domain
a.4.5.3 - Arginine repressor (ArgR), N-terminal DNA-binding domain
a.4.5.4 - CAP C-terminal domain-like
a.4.5.32 - Lrp/AsnC-like transcriptional regulator N-terminal domain
a.4.5.5 - ArsR-like transcriptional regulators
a.4.5.33 - Thanscriptional regulator IclR, N-terminal domain
a.4.5.28 - MarR-like transcriptional regulators
a.4.5.36 - DNA-binding protein Mj223
a.4.5.6 - GntR-like transcriptional regulators
a.4.5.7 - Replication terminator protein (RTP)
a.4.5.37 - LysR-like transcriptional regulators
a.4.5.8 - N-terminal domain of molybdate-dependent transcriptional regulator ModE
a.4.5.9 - Transcription factor MotA, activation domain
a.4.5.10 - Replication initiation protein
a.4.5.11 - Helicase DNA-binding domain
a.4.5.34 - SCF ubiquitin ligase complex WHB domain
a.4.5.35 - C-terminal fragment of elongation factor SelB
a.4.5.12 - Restriction endonuclease FokI, N-terminal (recognition) domain
a.4.5.27 - TnsA endonuclease, C-terminal domain
a.4.5.29 - Plant O-methyltransferase, N-terminal domain
a.4.5.13 - Histone H1/H5
a.4.5.14 - Forkhead DNA-binding domain
a.4.5.15 - DNA-binding domain from rap30
a.4.5.30 - C-terminal domain of the rap74 subunit of TFIIF
a.4.5.16 - C-terminal domain of RPA32
a.4.5.31 - DEP domain
a.4.5.17 - Cell cycle transcription factor e2f-dp
a.4.5.18 - The central core domain of TFIIE beta
a.4.5.19 - Z-DNA binding domain
a.4.5.20 - P4 origin-binding domain-like
a.4.5.21 - ets domain
a.4.5.22 - Heat-shock transcription factor
a.4.5.23 - Interferon regulatory factor
a.4.5.24 - Iron-dependent represor protein
a.4.5.25 - Methionine aminopeptidase, insert domain
a.4.6.1 - PhoB-like
a.4.6.2 - GerE-like (LuxR/UhpA family of transcriptional regulators)
a.4.6.3 - SpoOA
a.4.12.1 - Trp repressor, TrpR
a.4.12.2 - Chromosomal replication initiation factor DnaA C-terminal domain IV
a.4.7.1 - Ribosomal protein L11, C-terminal domain
a.4.8.1 - Ribosomal protein S18
a.4.9.1 - Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3
a.4.10.1 - N-terminal Zn binding domain of HIV integrase
a.4.11.1 - RNA polymerase subunit RPB10
a.4.13.1 - Sigma3 domain
a.4.13.2 - Sigma4 domain
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